species:   Artha
pid:       MI0019228
parent:    ath-MIR858b
paralog:   
locus:     1:26772633-26772935
matures:   ['UUCGUUGUCUGUUCGACCUUG', 'UGGAGAGUAGACAAAGAGAC']
srr:       SRR9216049
genome:    /Users/jax/+Genomes/Plant_genomes/Artha.TAIR10_chr_all.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216049.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216049.cram 1:26772633-26772935

0 out of bounds
2 alignments
1 proper strand
1 stranded perfect matches

              **********************                                                                                                                                                                                                                                            ***********************        
CCUACCCGAAGGGUUUUGGAGAGUAGACAAAGAGACAAACAUAGAGGUGUGAGUUUGGUUUGGUUUUGGGUUUUGGGGGGUUGGUAGUGUUUGAGGUCCAUAUGCCUCGAUCUUCCGCUUCUAUUAAUUAAUUUUCUCUAUUAGAAAUAUUAUCUAAUUAUUCCACUCCAUCGAACCAUGCACAUAUAUAAUGAUAUGUAUAAGCCCAUCAAAGUUUUUGAAUUCAGUGCAAACACUUGUCAAAGGAGCAGUCCCGAUCUGGUUCCAUCUUAUCUUCGUUGUCUGUUCGACCUUGGCUUUGGC
.....((((((......((.((((((((((.(((((..((((....))))..)))(((((((((...((((....((((((.((.((...(((((((......))))))).)).))))))))((((..(((((((((.....))))).))))..))))......)))).))))))))).((..(((((((....)))))))..))...........(((((....((((....))))..)))))(((((((.......)).))))).........)).))))))))))..))....)))))).
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUCGUUGUCUGUUCGACCUUG-------- l=21 a=0 c
----------------UGGAGAGUAGACAAAGAGAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=20 a=0 c*
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AUCAAAGUUUUUG----------------------------------------------------------------------------------- l=13 a=1 ma
----------------UGGAGAGUAGACAAAGAGAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=20 a=0 ma*

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AUCAAAGUUUUUG----------------------------------------------------------------------------------- l=13 a=1 (ma)

mb-00010
ax-1010001
ku-01
ss-100000101000
fn-001
